docker-compose-cdcgov-all.yml

x-multiqc-image:
  &multiqc-image
  cdcgov/multiqc:v1.19-alpine

x-fastqc-image:
  &fastqc-image
  cdcgov/fastqc:v0.12.1-alpine

x-bbtools-image:
  &bbtools-image
  cdcgov/bbtools:v39.01-alpine

x-cutadapt-image:
  &cutadapt-image
  cdcgov/cutadapt:v4.4-alpine

x-mira-nf-image:
  &mira-nf-image
  cdcgov/mira-nf:python3.10-alpine

x-data-volume:
  &data-volume
  type: bind
  source: /home/snu3/Github/FLU_SC2_SEQUENCING
  target: /data

services:
  multiqc:
    container_name: multiqc
    image: *multiqc-image
    restart: always
    volumes:
      - *data-volume
    command: tail -f /dev/null

  fastqc:
    container_name: fastqc
    image: *fastqc-image
    restart: always
    volumes:
      - *data-volume
    command: tail -f /dev/null

  bbtools:
    container_name: bbtools
    image: *bbtools-image
    volumes:
      - *data-volume
    command: tail -f /dev/null

  cutadapt:
    container_name: cutadapt
    image: *cutadapt-image
    restart: always
    volumes:
      - *data-volume
    command: tail -f /dev/null

  mira-nf: 
    container_name: mira-nf
    image: *mira-nf-image
    depends_on:
      - multiqc
      - fastqc
      - bbtools
      - cutadapt
    restart: always
    volumes:
      - *data-volume
    command: tail -f /dev/null