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InstallationGuide.md

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installation guide

Reruirment

The system requires you have:

  1. Access right to Computer center (台灣國網中心)
  2. A Windows-based computer with administration access right *

The whole installation process has two parts: 1) Computing Node computer center and 2) local installation

Computer Center

  1. Standard configuration as Computer center (台灣國網中心)
  2. Upload the following files to your $HOME directory
    1. TCMAnalyzer2.py
    2. snap.py (Stanford's SNAP library https://snap.stanford.edu/ )
    3. snap.pyc (Stanford's SNAP library https://snap.stanford.edu/ )
  3. Install Python library (for Python 2.6 台灣國網中心)
  • pip install --user argparse
  • pip install --user json
  • pip install --user unicodecsv
  • pip install --user bitarray
  1. Upload metadata files to $HOME directory (please pick the file with latest date if multiple)
    1. metadata.DRUG.NAME.translation_shortform.20170625.tab
    2. metadata.DRUG.feature.TCM.summary.level123.QiFlavorMeri.20170621.csv
  2. Create a working directory under $HOME directory
    • you may have $HOME/incoming for example
    • just leave the working directory empty