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Build fails on WSL Ubuntu 24 #1994

Open
juanlm-verus opened this issue Jan 23, 2025 · 2 comments
Open

Build fails on WSL Ubuntu 24 #1994

juanlm-verus opened this issue Jan 23, 2025 · 2 comments

Comments

@juanlm-verus
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Following up from #1981

Running WSL2


Distributor ID: Ubuntu
Description:    Ubuntu 24.04.1 LTS
Release:        24.04
Codename:       noble

Following instructions as described in the INSTALL.md file:


$ mkdir build
$ cd build
$ cmake ..
$ make check # (optional, runs unit tests)
$ make install

I get the following:


juan@XLS-LT-482PCC:/mnt/c/Users/juan.lopera/gtsam$ mkdir build && cd build
juan@XLS-LT-482PCC:/mnt/c/Users/juan.lopera/gtsam/build$ cmake ..
-- The CXX compiler identification is GNU 13.3.0
-- The C compiler identification is GNU 13.3.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- GTSAM_POSE3_EXPMAP=ON, enabling GTSAM_ROT3_EXPMAP as well
-- Performing Test COMPILER_HAS_WSUGGEST_OVERRIDE
-- Performing Test COMPILER_HAS_WSUGGEST_OVERRIDE - Success
-- Performing Test COMPILER_HAS_WMISSING_OVERRIDE
-- Performing Test COMPILER_HAS_WMISSING_OVERRIDE - Failed
-- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.65") found components: serialization system filesystem thread program_options date_time timer chrono regex 
-- Found Eigen version: 3.4.0
CMake Deprecation Warning at gtsam/3rdparty/metis/CMakeLists.txt:1 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Looking for execinfo.h
-- Looking for execinfo.h - found
-- Looking for getline
-- Looking for getline - found
-- checking for thread-local storage - found
-- Could NOT find MKL (missing: MKL_INCLUDE_DIR MKL_LIBRARIES) 
-- Found OpenMP_C: -fopenmp (found version "4.5") 
-- Found OpenMP_CXX: -fopenmp (found version "4.5") 
-- Found OpenMP: TRUE (found version "4.5")  
-- Building 3rdparty
-- Could NOT find GeographicLib (missing: GeographicLib_LIBRARY_DIRS GeographicLib_LIBRARIES GeographicLib_INCLUDE_DIRS) 
-- Building base
-- Building basis
-- Building constrained
-- Building geometry
-- Building inference
-- Building symbolic
-- Building discrete
-- Building hybrid
-- Building linear
-- Building nonlinear
-- Building sam
-- Building sfm
-- Building slam
-- Building navigation
-- GTSAM Version: 4.3a0
-- Install prefix: /usr/local
-- Building GTSAM - as a SHARED library
-- Building base_unstable
-- Building geometry_unstable
-- Building linear_unstable
-- Building discrete_unstable
-- Building dynamics_unstable
-- Building nonlinear_unstable
-- Building slam_unstable
-- Building partition_unstable
-- GTSAM_UNSTABLE Version: 4.3a0
-- Install prefix: /usr/local
-- Wrote /mnt/c/Users/juan.lopera/gtsam/build/GTSAMConfig.cmake
-- Wrote /mnt/c/Users/juan.lopera/gtsam/build/GTSAM_UNSTABLEConfig.cmake
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) 
-- ===============================================================
-- ================  Configuration Options  ======================
--  CMAKE_CXX_COMPILER_ID type                       : GNU
--  CMAKE_CXX_COMPILER_VERSION                       : 13.3.0
--  CMake version                                    : 3.28.3
--  CMake generator                                  : Unix Makefiles
--  CMake build tool                                 : /usr/bin/gmake
-- Build flags                                               
--  Build Tests                                      : Enabled
--  Build examples with 'make all'                   : Enabled
--  Build timing scripts with 'make all'             : Disabled
--  Build shared GTSAM libraries                     : Enabled
--  Put build type in library name                   : Enabled
--  Build libgtsam_unstable                          : Enabled
--  Build GTSAM unstable Python                      : Enabled
--  Build MATLAB Toolbox for unstable                : Disabled
--  Build for native architecture                    : Disabled
--  Build type                                       : Release
--  C compilation flags                              :  -O3 -DNDEBUG
--  C++ compilation flags                            :  -O3 -DNDEBUG
--  Enable Boost serialization                       : ON
--  GTSAM_COMPILE_FEATURES_PUBLIC                    : cxx_std_17
--  GTSAM_COMPILE_OPTIONS_PUBLIC                     : 
--  GTSAM_COMPILE_DEFINITIONS_PUBLIC                 : 
--  GTSAM_COMPILE_OPTIONS_PUBLIC_RELEASE             : 
--  GTSAM_COMPILE_DEFINITIONS_PUBLIC_RELEASE         : 
--  Use System Eigen                                 : OFF (Using version: 3.4.0)
--  Use System Metis                                 : OFF
--  Using Boost version                              : 1.83.0
--  Use Intel TBB                                    : Yes (Version: 2021.11.0)
--  Eigen will use MKL                               : MKL not found
--  Eigen will use MKL and OpenMP                    : OpenMP found but GTSAM_WITH_EIGEN_MKL is disabled
--  Default allocator                                : TBB
--  Cheirality exceptions enabled                    : YES
--  Build with ccache                                : Yes
-- Packaging flags
--  CPack Source Generator                           : TGZ
--  CPack Generator                                  : TGZ
-- GTSAM flags                                               
--  Quaternions as default Rot3                      : Disabled
--  Runtime consistency checking                     : Disabled
--  Build with Memory Sanitizer                      : Disabled
--  Rot3 retract is full ExpMap                      : Enabled
--  Pose3 retract is full ExpMap                     : Enabled
--  Enable branch merging in DecisionTree            : Enabled
--  Enable timing machinery                          : Disabled
--  Allow features deprecated in GTSAM 4.3           : Enabled
--  Metis-based Nested Dissection                    : Enabled
--  Use tangent-space preintegration                 : Enabled
-- MATLAB toolbox flags
--  Install MATLAB toolbox                           : Disabled
-- Python toolbox flags                                      
--  Build Python module with pybind                  : Disabled
-- ===============================================================
-- Configuring done (11.2s)
-- Generating done (65.8s)
-- Build files have been written to: /mnt/c/Users/juan.lopera/gtsam/build
juan@XLS-LT-482PCC:/mnt/c/Users/juan.lopera/gtsam/build$ make install
[  2%] Building C object gtsam/3rdparty/metis/libmetis/CMakeFiles/metis-gtsam.dir/__/GKlib/b64.c.o
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[  2%] Building C object gtsam/3rdparty/metis/libmetis/CMakeFiles/metis-gtsam.dir/__/GKlib/csr.c.o
[  2%] Building C object gtsam/3rdparty/metis/libmetis/CMakeFiles/metis-gtsam.dir/__/GKlib/error.c.o
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[  4%] Building C object gtsam/3rdparty/metis/libmetis/CMakeFiles/metis-gtsam.dir/__/GKlib/memory.c.o
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[  4%] Building C object gtsam/3rdparty/metis/libmetis/CMakeFiles/metis-gtsam.dir/__/GKlib/pdb.c.o
[  4%] Building C object gtsam/3rdparty/metis/libmetis/CMakeFiles/metis-gtsam.dir/__/GKlib/pqueue.c.o
[  4%] Building C object gtsam/3rdparty/metis/libmetis/CMakeFiles/metis-gtsam.dir/__/GKlib/random.c.o
[  4%] Building C object gtsam/3rdparty/metis/libmetis/CMakeFiles/metis-gtsam.dir/__/GKlib/rw.c.o
[  4%] Building C object gtsam/3rdparty/metis/libmetis/CMakeFiles/metis-gtsam.dir/__/GKlib/seq.c.o
[  4%] Building C object gtsam/3rdparty/metis/libmetis/CMakeFiles/metis-gtsam.dir/__/GKlib/sort.c.o
[  4%] Building C object gtsam/3rdparty/metis/libmetis/CMakeFiles/metis-gtsam.dir/__/GKlib/string.c.o
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[  9%] Building C object gtsam/3rdparty/metis/libmetis/CMakeFiles/metis-gtsam.dir/gklib.c.o
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[  9%] Building C object gtsam/3rdparty/metis/libmetis/CMakeFiles/metis-gtsam.dir/initpart.c.o
[  9%] Building C object gtsam/3rdparty/metis/libmetis/CMakeFiles/metis-gtsam.dir/kmetis.c.o
[  9%] Building C object gtsam/3rdparty/metis/libmetis/CMakeFiles/metis-gtsam.dir/kwayfm.c.o
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[  9%] Building C object gtsam/3rdparty/metis/libmetis/CMakeFiles/metis-gtsam.dir/mesh.c.o
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[ 68%] Building CXX object gtsam/CMakeFiles/gtsam.dir/navigation/GPSFactor.cpp.o
[ 68%] Building CXX object gtsam/CMakeFiles/gtsam.dir/navigation/ImuBias.cpp.o
[ 68%] Building CXX object gtsam/CMakeFiles/gtsam.dir/navigation/ImuFactor.cpp.o
[ 68%] Building CXX object gtsam/CMakeFiles/gtsam.dir/navigation/ManifoldPreintegration.cpp.o
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[ 68%] Building CXX object gtsam/CMakeFiles/gtsam.dir/navigation/TangentPreintegration.cpp.o
[ 68%] Linking CXX shared library libgtsam.so
[ 68%] Built target gtsam
[ 68%] Building CXX object examples/CMakeFiles/CameraResectioning.dir/CameraResectioning.cpp.o
[ 68%] Linking CXX executable CameraResectioning
[ 68%] Built target CameraResectioning
[ 68%] Building CXX object examples/CMakeFiles/CombinedImuFactorsExample.dir/CombinedImuFactorsExample.cpp.o
In file included from /mnt/c/Users/juan.lopera/gtsam/gtsam/base/Testable.h:36,
                 from /mnt/c/Users/juan.lopera/gtsam/gtsam/inference/Symbol.h:21,
                 from /mnt/c/Users/juan.lopera/gtsam/examples/CombinedImuFactorsExample.cpp:39:
/mnt/c/Users/juan.lopera/gtsam/gtsam/base/concepts.h:20: error: "BOOST_CONCEPT_USAGE" redefined [-Werror]
   20 | #define BOOST_CONCEPT_USAGE(concept) void check##concept()
      | 
In file included from /usr/include/boost/concept_check.hpp:31,
                 from /usr/include/boost/range/concepts.hpp:19,
                 from /usr/include/boost/range/size_type.hpp:20,
                 from /usr/include/boost/range/size.hpp:21,
                 from /usr/include/boost/range/functions.hpp:20,
                 from /usr/include/boost/range/iterator_range_core.hpp:38,
                 from /usr/include/boost/lexical_cast.hpp:48,
                 from /usr/include/boost/program_options/value_semantic.hpp:14,
                 from /usr/include/boost/program_options/options_description.hpp:13,
                 from /usr/include/boost/program_options.hpp:15,
                 from /mnt/c/Users/juan.lopera/gtsam/examples/CombinedImuFactorsExample.cpp:36:
/usr/include/boost/concept/usage.hpp:35: note: this is the location of the previous definition
   35 | #   define BOOST_CONCEPT_USAGE(model)                                    \
      | 
cc1plus: all warnings being treated as errors
make[2]: *** [examples/CMakeFiles/CombinedImuFactorsExample.dir/build.make:76: examples/CMakeFiles/CombinedImuFactorsExample.dir/CombinedImuFactorsExample.cpp.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:23462: examples/CMakeFiles/CombinedImuFactorsExample.dir/all] Error 2
make: *** [Makefile:166: all] Error 2

The previous issue #1981 was closed so I'm assuming that the build did succeed after merging the changes.
@ArkadiuszNiemiec ArkadiuszNiemiec mentioned this issue Jan 23, 2025
Open
@ArkadiuszNiemiec
Copy link

Faced the same issue. From what I understand the GTSAM_USE_BOOST_FEATURES identifier/macro check in:

gtsam/gtsam/base/concepts.h

Lines 11 to 24 in 7b56d66

#if GTSAM_USE_BOOST_FEATURES
#include <boost/concept_check.hpp>
#include <boost/concept/assert.hpp>
#include <boost/concept/requires.hpp>
#include <boost/concept_check.hpp>
#define GTSAM_CONCEPT_ASSERT(concept) BOOST_CONCEPT_ASSERT((concept))
#define GTSAM_CONCEPT_REQUIRES(concept, return_type) BOOST_CONCEPT_REQUIRES(((concept)), (return_type))
#else
// This does something sensible:
#define BOOST_CONCEPT_USAGE(concept) void check##concept()
// These just ignore the concept checking for now:
#define GTSAM_CONCEPT_ASSERT(concept) static_assert(true, "")
#define GTSAM_CONCEPT_REQUIRES(concept, return_type) return_type
#endif

...will always fail as it's never set in CMakeLists.txt.

The #1995 includes a potential fix, please test it.

@juanlm-verus
Copy link
Author

Hi Arkadiusz,

Thanks for the potential fix. It does seem to fix the initial error I reported as the build then proceeds passed the point at which it failed for me. However, I then seem to run into a new issue:


[ 92%] Linking CXX executable VisualISAM2Example
[ 92%] Built target VisualISAM2Example
[ 92%] Linking CXX executable SolverComparer
[ 92%] Built target SolverComparer
In file included from /mnt/c/Users/juan.lopera/gtsam/gtsam/3rdparty/Eigen/Eigen/src/Core/util/ConfigureVectorization.h:346,
                 from /mnt/c/Users/juan.lopera/gtsam/gtsam/3rdparty/Eigen/Eigen/Core:22,
                 from /mnt/c/Users/juan.lopera/gtsam/gtsam/3rdparty/Eigen/Eigen/Dense:1,
                 from /mnt/c/Users/juan.lopera/gtsam/gtsam/base/OptionalJacobian.h:24,
                 from /mnt/c/Users/juan.lopera/gtsam/gtsam/base/Matrix.h:27,
                 from /mnt/c/Users/juan.lopera/gtsam/gtsam_unstable/linear/QPSParser.cpp:20:
In function ‘void _mm_store_pd(double*, __m128d)’,
    inlined from ‘void Eigen::internal::pstore(Scalar*, const Packet&) [with Scalar = double; Packet = __vector(2) double]’ at /mnt/c/Users/juan.lopera/gtsam/gtsam/3rdparty/Eigen/Eigen/src/Core/arch/SSE/PacketMath.h:790:126,
    inlined from ‘void Eigen::internal::pstoret(Scalar*, const Packet&) [with Scalar = double; Packet = __vector(2) double; int Alignment = 16]’ at /mnt/c/Users/juan.lopera/gtsam/gtsam/3rdparty/Eigen/Eigen/src/Core/GenericPacketMath.h:978:11,
    inlined from ‘void Eigen::internal::assign_op<DstScalar, SrcScalar>::assignPacket(DstScalar*, const Packet&) const [with int Alignment = 16; Packet = __vector(2) double; DstScalar = double; SrcScalar = double]’ at /mnt/c/Users/juan.lopera/gtsam/gtsam/3rdparty/Eigen/Eigen/src/Core/functors/AssignmentFunctors.h:28:50,
    inlined from ‘void Eigen::internal::generic_dense_assignment_kernel<DstEvaluatorTypeT, SrcEvaluatorTypeT, Functor, Version>::assignPacket(Eigen::Index, Eigen::Index) [with int StoreMode = 16; int LoadMode = 0; PacketType = __vector(2) double; DstEvaluatorTypeT = Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator<Eigen::Matrix<double, -1, -1> >; Functor = Eigen::internal::assign_op<double, double>; int Version = 0]’ at /mnt/c/Users/juan.lopera/gtsam/gtsam/3rdparty/Eigen/Eigen/src/Core/AssignEvaluator.h:675:47,
    inlined from ‘void Eigen::internal::generic_dense_assignment_kernel<DstEvaluatorTypeT, SrcEvaluatorTypeT, Functor, Version>::assignPacketByOuterInner(Eigen::Index, Eigen::Index) [with int StoreMode = 16; int LoadMode = 0; PacketType = __vector(2) double; DstEvaluatorTypeT = Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator<Eigen::Matrix<double, -1, -1> >; Functor = Eigen::internal::assign_op<double, double>; int Version = 0]’ at /mnt/c/Users/juan.lopera/gtsam/gtsam/3rdparty/Eigen/Eigen/src/Core/AssignEvaluator.h:689:48,
    inlined from ‘static void Eigen::internal::dense_assignment_loop<Kernel, 4, 0>::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false> >, Eigen::internal::evaluator<Eigen::Matrix<double, -1, -1> >, Eigen::internal::assign_op<double, double>, 0>]’ at /mnt/c/Users/juan.lopera/gtsam/gtsam/3rdparty/Eigen/Eigen/src/Core/AssignEvaluator.h:572:86,
    inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; SrcXprType = Eigen::Matrix<double, -1, -1>; Functor = assign_op<double, double>]’ at /mnt/c/Users/juan.lopera/gtsam/gtsam/3rdparty/Eigen/Eigen/src/Core/AssignEvaluator.h:785:37,
    inlined from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; SrcXprType = Eigen::Matrix<double, -1, -1>; Functor = Eigen::internal::assign_op<double, double>; Weak = void]’ at /mnt/c/Users/juan.lopera/gtsam/gtsam/3rdparty/Eigen/Eigen/src/Core/AssignEvaluator.h:954:31,
    inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Matrix<double, -1, -1>; Func = assign_op<double, double>]’ at /mnt/c/Users/juan.lopera/gtsam/gtsam/3rdparty/Eigen/Eigen/src/Core/AssignEvaluator.h:890:49,
    inlined from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Matrix<double, -1, -1>; Func = assign_op<double, double>]’ at /mnt/c/Users/juan.lopera/gtsam/gtsam/3rdparty/Eigen/Eigen/src/Core/AssignEvaluator.h:858:27,
    inlined from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; Src = Eigen::Matrix<double, -1, -1>]’ at /mnt/c/Users/juan.lopera/gtsam/gtsam/3rdparty/Eigen/Eigen/src/Core/AssignEvaluator.h:836:18,
    inlined from ‘Derived& Eigen::MatrixBase<Derived>::operator=(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Matrix<double, -1, -1>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>]’ at /mnt/c/Users/juan.lopera/gtsam/gtsam/3rdparty/Eigen/Eigen/src/Core/Assign.h:66:28,
    inlined from ‘void gtsam::JacobianFactor::fillTerms(const TERMS&, const gtsam::Vector&, const gtsam::SharedDiagonal&) [with TERMS = std::map<long unsigned int, Eigen::Matrix<double, 1, 1, 0, 1, 1> >]’ at /mnt/c/Users/juan.lopera/gtsam/gtsam/linear/JacobianFactor-inl.h:94:14:
/usr/lib/gcc/x86_64-linux-gnu/13/include/emmintrin.h:169:19: error: ‘void* __builtin_memcpy(void*, const void*, long unsigned int)’ reading 16 or more bytes from a region of size 8 [-Werror=stringop-overread]
  169 |   *(__m128d *)__P = __A;
      |   ~~~~~~~~~~~~~~~~^~~~~
In file included from /mnt/c/Users/juan.lopera/gtsam/gtsam/3rdparty/Eigen/Eigen/Core:166:
In function ‘void* Eigen::internal::aligned_malloc(std::size_t)’,
    inlined from ‘void* Eigen::internal::conditional_aligned_malloc(std::size_t) [with bool Align = true]’ at /mnt/c/Users/juan.lopera/gtsam/gtsam/3rdparty/Eigen/Eigen/src/Core/util/Memory.h:241:24,
    inlined from ‘T* Eigen::internal::conditional_aligned_new_auto(std::size_t) [with T = double; bool Align = true]’ at /mnt/c/Users/juan.lopera/gtsam/gtsam/3rdparty/Eigen/Eigen/src/Core/util/Memory.h:404:69,
    inlined from ‘void Eigen::DenseStorage<T, -1, -1, -1, _Options>::resize(Eigen::Index, Eigen::Index, Eigen::Index) [with T = double; int _Options = 0]’ at /mnt/c/Users/juan.lopera/gtsam/gtsam/3rdparty/Eigen/Eigen/src/Core/DenseStorage.h:486:85,
    inlined from ‘void Eigen::PlainObjectBase<Derived>::resize(Eigen::Index, Eigen::Index) [with Derived = Eigen::Matrix<double, -1, -1>]’ at /mnt/c/Users/juan.lopera/gtsam/gtsam/3rdparty/Eigen/Eigen/src/Core/PlainObjectBase.h:285:25,
    inlined from ‘void Eigen::internal::resize_if_allowed(DstXprType&, const SrcXprType&, const assign_op<T1, T2>&) [with DstXprType = Eigen::Matrix<double, -1, -1>; SrcXprType = Eigen::Matrix<double, 1, 1, 0, 1, 1>; T1 = double; T2 = double]’ at /mnt/c/Users/juan.lopera/gtsam/gtsam/3rdparty/Eigen/Eigen/src/Core/AssignEvaluator.h:764:15,
    inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix<double, -1, -1>; SrcXprType = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Functor = assign_op<double, double>]’ at /mnt/c/Users/juan.lopera/gtsam/gtsam/3rdparty/Eigen/Eigen/src/Core/AssignEvaluator.h:778:20,
    inlined from ‘static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix<double, -1, -1>; SrcXprType = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Functor = Eigen::internal::assign_op<double, double>; Weak = void]’ at /mnt/c/Users/juan.lopera/gtsam/gtsam/3rdparty/Eigen/Eigen/src/Core/AssignEvaluator.h:954:31,
    inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix<double, -1, -1>; Src = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Func = assign_op<double, double>]’ at /mnt/c/Users/juan.lopera/gtsam/gtsam/3rdparty/Eigen/Eigen/src/Core/AssignEvaluator.h:890:49,
    inlined from ‘Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Derived = Eigen::Matrix<double, -1, -1>]’ at /mnt/c/Users/juan.lopera/gtsam/gtsam/3rdparty/Eigen/Eigen/src/Core/PlainObjectBase.h:797:41,
    inlined from ‘void Eigen::PlainObjectBase<Derived>::_init1(const Eigen::DenseBase<ElseDerived>&) [with T = Eigen::Matrix<double, 1, 1, 0, 1, 1>; OtherDerived = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Derived = Eigen::Matrix<double, -1, -1>]’ at /mnt/c/Users/juan.lopera/gtsam/gtsam/3rdparty/Eigen/Eigen/src/Core/PlainObjectBase.h:883:25,
    inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Matrix<double, 1, 1, 0, 1, 1>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ at /mnt/c/Users/juan.lopera/gtsam/gtsam/3rdparty/Eigen/Eigen/src/Core/Matrix.h:332:31,
    inlined from ‘constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = Eigen::Matrix<double, 1, 1, 0, 1, 1>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = Eigen::Matrix<double, -1, -1>]’ at /usr/include/c++/13/bits/stl_pair.h:586:22,
    inlined from ‘void gtsam::JacobianFactor::fillTerms(const TERMS&, const gtsam::Vector&, const gtsam::SharedDiagonal&) [with TERMS = std::map<long unsigned int, Eigen::Matrix<double, 1, 1, 0, 1, 1> >]’ at /mnt/c/Users/juan.lopera/gtsam/gtsam/linear/JacobianFactor-inl.h:84:37:
/mnt/c/Users/juan.lopera/gtsam/gtsam/3rdparty/Eigen/Eigen/src/Core/util/Memory.h:182:20: note: source object of size 8 allocated by ‘malloc’
  182 |     result = malloc(size);
      |              ~~~~~~^~~~~~
cc1plus: all warnings being treated as errors
make[2]: *** [gtsam_unstable/CMakeFiles/gtsam_unstable.dir/build.make:188: gtsam_unstable/CMakeFiles/gtsam_unstable.dir/linear/QPSParser.cpp.o] Error 1
make[2]: *** Waiting for unfinished jobs....
make[1]: *** [CMakeFiles/Makefile2:28025: gtsam_unstable/CMakeFiles/gtsam_unstable.dir/all] Error 2
make: *** [Makefile:166: all] Error 2

Perhaps the -Werror=stringop-overread should also be ignored in other locations as it is in testFourier.cpp after the fixes in #1978

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