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slow-odgi: extract #100

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Tracked by #46
anshumanmohan opened this issue May 31, 2023 · 0 comments
Open
Tracked by #46

slow-odgi: extract #100

anshumanmohan opened this issue May 31, 2023 · 0 comments
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@anshumanmohan
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feature New feature, or a meaningful extension to an existing feature juicy More interesting than a chore, yet well-defined enough to be completed without getting too lost
Milestone
slow odgi 0.2

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@anshumanmohan
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Just making a note that odgi extract is wicked cool and I'd like to implement it in slow-odgi sometime.

https://hackmd.io/@AndreaGuarracino/SyhbiKuE2#Lipoprotein-A-graph

odgi extract -i LPA.og -n 23 -c 1 -d 0 -o LPA.21_23_G_GT.og

The instruction extracts:

  • the node with ID 23 (-n 23),
  • the nodes reachable from this node following a single edge (-c 1) in the graph topology,
  • the edges connecting all the extracted nodes, and
  • the paths traversing all the extracted nodes.
@anshumanmohan anshumanmohan added this to the slow odgi 0.2 milestone May 31, 2023
@anshumanmohan anshumanmohan self-assigned this May 31, 2023
@anshumanmohan anshumanmohan mentioned this issue Jun 9, 2023
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@anshumanmohan anshumanmohan added the feature New feature, or a meaningful extension to an existing feature label Jun 20, 2023
@anshumanmohan anshumanmohan added the juicy More interesting than a chore, yet well-defined enough to be completed without getting too lost label Jul 19, 2023
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feature New feature, or a meaningful extension to an existing feature juicy More interesting than a chore, yet well-defined enough to be completed without getting too lost
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slow odgi 0.2
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