README.md

scijava-parallel

A project aiming to utilize parallelization within SciJava

Use remote Fiji as worker

Fiji that could be used as worker should contain libraries from update site of ImageJ server (Server) and these (in jars folder):

• httpclient-4.5.2.jar
• httpcore-4.4.4.jar
• httpmime-4.3.1.jar
• json-simple-1.1.jar

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This repository holds implementation of parallelization profiles Parallel Paradigm, which are also used to connect to clusters. To edit relevant parameters, the repository also includes a few GUI dialogs.

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Relevant links of interest

The most visible project that benefits from this codebase is the HPC Workflow Manager. Below are links relevant to it:

• The Short Guide on how to install and use the HPC Workflow Manager
• The official web page about the whole HPC Workflow Manager
• Wiki page of the HPC Workflow Manager on imagej.net