File_index.md

Following files need to be added manually:

RawData_files

00_RawData/cohorts.csv
00_RawData/MetadataUC3.csv
00_RawData/Mo_GSE112057_RawCounts_dataset.txt
00_RawData/Mo_samplecasecontroltable.csv
00_RawData/merged_gene_counts_UC2.txt
00_RawData/ostrowski_merged_gene_counts.txt
00_RawData/ostrowski_secondcohort.csv
00_RawData/planell_expression.txt
00_RawData/planell_sample_metadata.txt
00_RawData/merged_gene_counts_PSC.txt
00_RawData/metadataPSCcomplete.csv
00_RawData/cibersort_results/uc_cohort_fractions_only/CIBERSORTx_Job33_Adjusted.txt
00_RawData/cibersort_results/psc_cohort_fractions_only/CIBERSORTx_Job32_Adjusted.txt

data_rescourcces

data_rescources/GO_biological_Process_2018.gmt