could not find the raw "ncbi_lineages" file

[CaiCheng1996]

Hi ! very insteresting tools. I have problems in step 2 for running ncbitax2lin to generate a raw "ncbi_lineages" file from the NCBI taxdump. Here is the report:

gzip: ncbi_lineages_.csv.gz: No such file or directory
mv: Not available "ncbi_lineages_.csv" stat: No such file or directory
ls: inaccessible ./ncbi_lineages_*.csv: No such file or directory

Finished generating a raw "ncbi_lineages" file named
Keep it in case you want to run genEra with another species (-r)

ERROR: genEra could not find the raw "ncbi_lineages" file:

If step 1 ran succesfully, the user can resume from this step using the argument -p
Exiting

Could you give me some suggestions?

[josuebarrera]

Dear @CaiCheng1996,

We appreciate your interest in GenEra! I will gladly help you.
It seems that the pipeline had an error identifying the NCBI Taxonomy ID of your organism and therefore labeled the file wrong. Could you please share with me the command that you used to run GenEra and the entire STDOUT? Also, please let me know if you installed the pipeline using conda or if you are using the Docker image.

Best regards,
Josué