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!src/ontology/tmp/README.md
*.tmp
*.tmp.json
*.tmp.obo
*.tmp.owl
.DS_Store
.github/token.txt
.idea
bin/
dosdp-tools.log
semantic.cache
src/curation/old-matches/
src/curation/ontologies-for-matching/
src/curation/pattern-matches-test/
src/curation/pattern-matches-test2/
src/curation/s3/
src/curation/s3/hp/abnormalDegenerationOfAnatomicalEntity.tsv
src/curation/tmp/
src/curation/upheno-fillers-no-id/
src/curation/upheno-profiles/
src/curation/upheno-release-prepare/
src/curation/upheno-release/
src/curation/upheno-stats/
src/curation/upheno-stats2/
src/curation/upheno_release/all/upheno_old_metazoa.owl
src/ontology/AWSCLIV2.pkg
src/ontology/archive/inferred_ontology.owl
src/ontology/archive/merged_ontology.owl
src/ontology/dosdp-tools.log
src/ontology/ed_definitions_merged.owl
src/ontology/imports/*_terms_combined.txt
src/ontology/inferred_ontology.owl
src/ontology/merged-upheno-edit.owl
src/ontology/merged_ontology.owl
src/ontology/mirror
src/ontology/mirror/*
src/ontology/ontologyterms.txt
src/ontology/patterns
src/ontology/patterns 
src/ontology/reports/*
src/ontology/run.sh.conf
src/ontology/run.sh.env
src/ontology/seed.txt
src/ontology/simple_seed.txt
src/ontology/target/
src/ontology/tmp/*
src/ontology/tmp/mat_upheno.owl
src/ontology/upheno-base.*
src/ontology/upheno-base.owl
src/ontology/upheno-basic.*
src/ontology/upheno-full.*
src/ontology/upheno-simple-non-classified.*
src/ontology/upheno-simple.*
src/ontology/upheno.json
src/ontology/upheno.obo
src/ontology/upheno.owl
src/patterns/all_pattern_terms.txt
src/patterns/data/**/*.ofn
src/patterns/data/**/*.txt
src/patterns/imports/seed_sorted.txt
src/patterns/pattern_owl_seed.txt
src/scripts/.ipynb_checkpoints/lexical_mapping-checkpoint.ipynb
src/scripts/.ipynb_checkpoints/upheno_analysis-checkpoint.ipynb
src/scripts/__pycache__/lib.cpython-36.pyc
src/scripts/__pycache__/lib.cpython-38.pyc
src/scripts/matches2020-10-15/
src/scripts/pattern-matches-oneoff/matches_old/*
src/scripts/pattern-matches-oneoff/ontologies/hp.owl
src/scripts/pattern-matches-oneoff/ontologies/mp.owl
src/scripts/pattern-matches-oneoff/ontologies/wbphenotype.owl
src/scripts/pattern-matches-oneoff/ontologies/xpo.owl
src/scripts/pattern-matches-oneoff/ontologies/zp.owl
src/scripts/pattern-matches-oneoff/upheno_patterns/*.yaml
src/scripts/pattern-matches/generic_matches/
src/scripts/pattern-matches/matches_old/
src/scripts/pattern-matches/ontologies/
src/scripts/pattern-matches/upheno_matches/
src/scripts/pattern-matches/upheno_patterns/
src/scripts/pattern_match0.sh
src/scripts/scratch.py
src/scripts/upheno_all_with_relations.owl
src/scripts/upheno_all_with_relations_mod.owl
sync.sh
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src/scripts/chebi.txt
src/ontology/log.txt
src/ontology/imports/merged_import.owl
upheno-base-with-bridge.json
upheno-base-with-bridge.obo
upheno-base-with-bridge.owl
upheno-base.json
upheno-base.obo
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upheno-curated.json
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upheno-equivalence-model.json
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upheno-full.json
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upheno-old-model.json
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upheno.json
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src/ontology/upheno.db
src/ontology/semsim/upheno-0.4.semsimian.tsv
src/ontology/imports/all_phenotype_terms.txt
src/ontology/config/prefixes.csv
src/ontology/upheno-test.db
src/ontology/upheno-test.owl
upheno-test.owl
src/mappings/upheno-oba.kgx