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Overhaul the package#49

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jkanche merged 35 commits intomasterBiocPy/IRanges:masterfrom super-haulBiocPy/IRanges:super-haulCopy head branch name to clipboardJan 7, 2025

+2,278-1,082

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Commits on Jan 2, 2025

• Rename actions

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Commits on Jan 3, 2025

• rewriting coverage, shift and clip based on iranges implementation

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• remove prints

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• Merge branch 'super-haul' of https://github.com/biocpy/iranges into super-haul

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• Reimplement in cpp

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• follow the same structure as scrnapy, use int32

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• migrate some of the functions to cpp; pretty much similar implementation

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• don't like the cpp formatter; undo

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• Merge branch 'super-haul' of https://github.com/biocpy/iranges into super-haul

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• add missing disjoint bins and is disjoint methods

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Commits on Jan 5, 2025

• - Properly implementing the start/end/width parameter handler.

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• add reference links to bioc/r implementations

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• Fix reflect when the number of ranges in bounds is less than the input ranges

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• Merge branch 'super-haul' of https://github.com/biocpy/iranges into super-haul

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Commits on Jan 6, 2025

• EOD for overlap ops

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• i think this is a better implementation

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Commits on Jan 7, 2025

• clenaing up overlap based methods

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• nearest kind of works

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• nearest kind of works

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• Merge branch 'super-haul' of https://github.com/biocpy/iranges into super-haul

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• add wrapper to combine multiple iranges

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• Merge branch 'super-haul' of https://github.com/biocpy/iranges into super-haul

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• add changelog and minor other changes

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• remove the prints

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• Merge branch 'super-haul' of https://github.com/biocpy/iranges into super-haul

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