add conda and docker configuration of the packages

envs/release.yml

@@ -0,0 +1,62 @@
+name: biocpy_devel
+channels:
+  - conda-forge
+dependencies:
+  - python=3.11
+  - openssl
+  - hdf5
+  - h5py
+  - cmake
+  - pip
+  - pip:
+      # BiocPy packages
+      - biocframe>=0.5.0
+      - summarizedexperiment>=0.5.3
+      - singlecellexperiment>=0.5.3
+      - multiassayexperiment>=0.5.0
+      - genomicranges
+      - iranges
+      - biocutils
+      - rds2py>=0.6.1
+      - pybiocfilecache
+      - mopsy
+      # Bioc - delayed arrays
+      - delayedarray
+      - hdf5array
+      - tiledbarray
+      # Analysis methods
+      - scranpy
+      - singler
+      # Interop
+      - anndata<0.11
+      - mudata
+      # Bioc hubs
+      - scrnaseq
+      - celldex
+      # ArtifactDB
+      - dolomite
+      - dolomite-base>=0.4.2
+      - dolomite-matrix>=0.2.1
+      - dolomite-ranges>=0.1.1
+      - dolomite-se>=0.3.0
+      - dolomite-sce>=0.3.0
+      - dolomite-mae>=0.2.0
+      # CellArr
+      - tiledb
+      - cellarr
+      # Rest
+      - numpy
+      - scipy
+      - pandas
+      - jupyter-cache
+      - rich
+      - jupyterlab
+      - ipykernel
+      - seaborn
+      - session-info
+      - natsort
+      - python-dateutil
+      - pyarrow
+      - pybind11
+      - delayedarray[dask]>=0.5.0
+      - joblib

release.dockerfile

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+FROM condaforge/miniforge3:latest
+
+WORKDIR /biocenv
+COPY . /biocenv
+RUN mamba --version
+
+RUN mamba env create -f env/release.yml