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mdavis95 authored Jan 6, 2025
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# Predictive Breakthroughs

This repository contains code to reproduce the results of the `Prediction of transformative breakthroughs in biomedical research` manuscript. This includes the co-citation network calculation for all of PubMed, the R-MCL clustering of the co-cocitation networks, the trajectory generation, and the logistic regression and post regression processing for identification of breakthrough signals.
This repository contains code to reproduce the results of the *Prediction of transformative breakthroughs in biomedical research manuscript*. This includes the co-citation network calculation for all of PubMed, the R-MCL clustering of the co-cocitation networks, the trajectory generation, and the logistic regression and post regression processing for identification of breakthrough signals.

In addition, it includes code that can be used independently for co-citation network (CCN) computation and MCL/R-MCL (Regularized Markov Clustering Algorithm) clustering.
The CCN code has been tested on the entire nih open citation collection with more than 25 million cited publications and 750 million citations.
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