Skip to content

Commit

Permalink
Update README.md
Browse files Browse the repository at this point in the history
  • Loading branch information
mdavis95 authored Feb 16, 2024
1 parent 58f7e71 commit 72b5426
Showing 1 changed file with 3 additions and 2 deletions.
5 changes: 3 additions & 2 deletions README.md
Original file line number Diff line number Diff line change
@@ -1,5 +1,7 @@
# Predictive Breakthroughs

This respository contains code to reproduce the results of the predictive breakthroughs manuscript. In addition, it includes code that can be used independently for cocitation network (CCN) computation and MCL/R-MCL (Regularized Markov Clustering Algorithm). The R-MCL code algorithm has been tested on networks with more than 25 million nodes and 1 billion edges.

### Setup Environment

* Checkout code from this GitHub repository
Expand Down Expand Up @@ -29,8 +31,7 @@
* maxYear filters the citation network to the year in question. Stepping the max year through a range over a series of runs allows the analysis of the CCN
network over time

### Run MCL calculation

### Run R-MCL calculation
* `./mclCmd/build/install/bin/mcl run --input /path/to/output/ccn.tsv --output /path/to/output/rmcl --inflation 1.2 --maxIterations 500`
* The recommend inflation is 1.2 to match the results of the manuscript. Inflation the amount of granularity in clustering with higher inflation values
causing more broken up clusters
Expand Down

0 comments on commit 72b5426

Please sign in to comment.