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mdavis95 committed Feb 16, 2024
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# Predictive Breakthroughs

This respository contains code to reproduce the results of the predictive breakthroughs manuscript. In addition, it includes code that can be used independently for cocitation network (CCN) computation and MCL/R-MCL (Regularized Markov Clustering Algorithm). The R-MCL code algorithm has been tested on networks with more than 25 million nodes and 1 billion edges.
This repository contains code to reproduce the results of the predictive breakthroughs manuscript. In addition, it includes code that can be used independently for cocitation network (CCN) computation and MCL/R-MCL (Regularized Markov Clustering Algorithm). The R-MCL code algorithm has been tested on networks with more than 25 million nodes and 1 billion edges.

### Setup Environment

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causing more broken up clusters
* The recommend max iterations is 500 to match the results of the manuscript. This parameter determines the maximum iterations of the RMCL algorithm are run
before terminating
* If running latest year set JVM size to 350g
* If running latest year set JVM size to 350g, earlier years take far less
* Specific `JAVA_OPTS="-Xmx350g"` at the start of the command line, set the environment variable or edit the bash script

# Automation
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