Suite of MATLAB algorithms (recommended to be used with App Designer GUI) for the analysis and coincidence detection of local field sharp wave ripples (SWRs), local field oscillations (theta, gamma, etc.), spikes (SWR coincidence and spike-phase coupling), post-synaptic currents (PSCs), and calcium transients.
Written in MATLAB 2022a Update 4
Mathworks Toolbox Requirements: Signal Processing Toolbox Curve Fitting Toolbox Statistics and Machine Learning Toolbox Parallel Computing Toolbox
3rd Party Addon Requirements: fcollman/abfload v1.13.0.0 Circular Statistics Toolbox (Directional Statistics) v1.21.0.0 chenxinfeng4/scalebar v1.0.0.0
Acknowledgements: SWR RMS-based detection modeled after Siapas and Wilson 1998; Csicsvari et al. 1999, Eschenko et al. 2008 Spike-phase coupling modeled after Varga et al. 2012 LFP-Spike phase-amplitude coupling adapted from Canolty et al. 2006 and Onslow et al. 2011
Please cite Caccavano et al. J. Neurosci. 2020 and above acknowledgements (if using those specific functions)