debugging

clemente-lab · Jul 23, 2024 · 725b46e · 725b46e
1 parent 1119475
commit 725b46e
Showing 1 changed file with 4 additions and 0 deletions.
diff --git a/mmeds/tools/analysis.py b/mmeds/tools/analysis.py
@@ -433,10 +433,14 @@ def run_analysis(self):
             if self.testing or not (self.run_on_node == -1):
                 Logger.debug('I {} am about to run'.format(self.name))
                 jobfile.chmod(0o770)
+                with open(jobfile, 'r') as f:
+                    Logger.debug(f"Jobfile:\n{f.read()}")
                 # Send the output to the error log
                 with open(self.get_file('errorlog', True), 'w+', buffering=1) as f:
                     # Run the command
                     run([jobfile], stdout=f, stderr=f)
+                with open(self.get_file('errorlog', True), 'r') as f:
+                    Logger.debug(f"Job stdout/err:\n{f.read()}")
                 Logger.debug('I {} have finished running'.format(self.name))
             else:
                 # Create a file to execute the submission