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@ebi-gene-expression-group

EBI Gene Expression Group

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  1. anatomogram anatomogram Public

    Anatomogram illustrating Expression Atlas experiments

    JavaScript 42 20

  2. scanpy-scripts scanpy-scripts Public

    Scripts for using scanpy

    Python 32 13

  3. atlas atlas Public archive

    Expression Atlas

    Java 26 5

  4. r-seurat-scripts r-seurat-scripts Public

    Scripts to install as a Bioconda package for making workflows

    R 18 4

  5. container-galaxy-sc-tertiary container-galaxy-sc-tertiary Public

    Galaxy container for single cell RNA-Seq tertiary analysis tools

    Python 17 14

  6. scxa-workflows scxa-workflows Public

    Higher level repo for aggregating all of Atlas workflow logic for Single Cell

    Shell 14 2

Repositories

Showing 10 of 184 repositories
  • atlas-components Public

    Front end components of Expression Atlas and Single Cell Expression Atlas

    ebi-gene-expression-group/atlas-components’s past year of commit activity
    JavaScript 3 3 14 3 Updated Jan 23, 2025
  • scxa-workflows Public

    Higher level repo for aggregating all of Atlas workflow logic for Single Cell

    ebi-gene-expression-group/scxa-workflows’s past year of commit activity
    Shell 14 Apache-2.0 2 6 1 Updated Jan 22, 2025
  • scxa-tertiary-workflow Public

    Tertiary component for SCXA workflows

    ebi-gene-expression-group/scxa-tertiary-workflow’s past year of commit activity
    Nextflow 0 0 2 0 Updated Jan 22, 2025
  • atlas-web-bulk2 Public

    Repository for Bulk Expression Atlas web application based on SpringBoot framework

    ebi-gene-expression-group/atlas-web-bulk2’s past year of commit activity
    0 Apache-2.0 0 0 1 Updated Jan 22, 2025
  • atlas-web-core2 Public

    Business logic for Single Cell and Bulk Expression Atlas based on SpringBoot framework

    ebi-gene-expression-group/atlas-web-core2’s past year of commit activity
    0 Apache-2.0 0 0 1 Updated Jan 22, 2025
  • bioconductor-ExpressionAtlas Public

    Download datasets from EMBL-EBI Expression Atlas

    ebi-gene-expression-group/bioconductor-ExpressionAtlas’s past year of commit activity
    R 0 1 1 1 Updated Jan 20, 2025
  • scxa-bundle-workflow Public

    Workflow for making bundles for Single-cell Expression Atlas

    ebi-gene-expression-group/scxa-bundle-workflow’s past year of commit activity
    Nextflow 0 0 1 0 Updated Jan 20, 2025
  • atlas-web-single-cell Public

    Single Cell Expression Atlas web application

    ebi-gene-expression-group/atlas-web-single-cell’s past year of commit activity
    Java 5 Apache-2.0 5 79 5 Updated Jan 15, 2025
  • scanpy-scripts Public

    Scripts for using scanpy

    ebi-gene-expression-group/scanpy-scripts’s past year of commit activity
    Python 32 Apache-2.0 13 12 5 Updated Jan 15, 2025
  • scxa-control-workflow Public

    Master Nextflow workflow for running each component of the SMART-seq and droplet SCXA pipelines

    ebi-gene-expression-group/scxa-control-workflow’s past year of commit activity
    R 4 2 4 0 Updated Jan 14, 2025
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