Edit reviewer experiment (#121)

* continue to debug simulation experiment

* debug strength issue for experiment

* update figure 1

* Update explore_simulation_approach/3_evaluate.ipynb

Co-authored-by: Jake Crawford <kitttttens@yahoo.com>

* remove old nbs

* update based on PR comments

* minor typo in readme

Co-authored-by: Jake Crawford <kitttttens@yahoo.com>

README.md

@@ -56,7 +56,8 @@ This approach allows investigators to distinguish common DEGs from context speci
 **How to reproduce the results and figures of the paper**
 
 *Operating Systems:* Mac OS, Linux (Note: bioconda libraries not available in Windows)
-*Note: *While the trends will be consistent, you may get slightly different resulting statistics and the plots may not look exactly the same as the paper.
+
+*Note:* While the trends will be consistent, you may get slightly different resulting statistics and the plots may not look exactly the same as the paper.
 Despite our best efforts to set seeds and version of python packages there is still some randomness we’re unable to control in the simulation process.
 
 In order to run this simulation on your own gene expression data the following steps should be performed: