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add processDriverProfile() funcEnrich.GSEA() modify cal.Activity.GS()…
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… draw.GSEA()
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SherryDong committed Apr 13, 2020
1 parent 3659417 commit b6a60a9
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319 changes: 314 additions & 5 deletions R/pipeline_functions.R

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34 changes: 30 additions & 4 deletions man/cal.Activity.GS.Rd

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46 changes: 40 additions & 6 deletions man/draw.GSEA.Rd

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1 comment on commit b6a60a9

@adamdingliang
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return_type driver_name should include _TF or _SIG suffix?

driver_names <- processDriverProfile(analysis.par$final_ms_tab$P.Value.mu.vs.wt_DA, analysis.par$DA$mu.vs.wt$gene_symbol, return_type = 'driver_name')
str(driver_names)
chr [1:7469] "PPA1" "TEAD4" "ACOT7" "NPM1" "DAPK2" "AHCY" "NRGN" "STAT2" "GABRR1" "SLC25A5" "EPRS" "ATP5A1" "B4GALT6" "SHMT2" "KLF3" "OLA1" ...

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