add CI

.github/workflows/release.yml

@@ -0,0 +1,27 @@
+on:
+  push:
+    # Sequence of patterns matched against refs/tags
+    tags:
+      - 'v[0-9]+.[0-9]+.0' # Push events to matching v*, i.e. v1.0, v20.15.10
+
+name: Create Minor Release
+
+jobs:
+  build:
+    name: Create Release
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v2
+      - name: Create Release
+        id: create_release
+        uses: actions/create-release@v1
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # This token is provided by Actions, you do not need to create your own token
+        with:
+          tag_name: ${{ github.ref }}
+          release_name: Release ${{ github.ref }}
+          body: |
+            Please see https://github.com/micom-dev/micom/blob/master/NEWS.md for the full release notes.
+          draft: false
+          prerelease: false

.gitignore

@@ -127,3 +127,6 @@ dmypy.json
 
 # Pyre type checker
 .pyre/
+
+# specific
+data/*.qza

NEWS.md

@@ -0,0 +1,12 @@
+## News and release notes for MICOM media
+
+This includes a list of major changes for each minor version.
+
+For information on how to use `MICOM` please see the docs at
+https://micom-dev.github.io/micom.
+
+### 1.0.0
+
+Initial release that includes western diet gut media for AGORA and CARVEME.
+
+Add instructions on how to contribute.

README.md

@@ -1,6 +1,6 @@
 # Environmental growth media for MICOM :seedline: :earth_africa: :pizza:
 
-This repo contains recipes and artifacts for growth media with use in MICOM. Community contributions are very much welcome and invited :smile: 
+This repo contains recipes and artifacts for growth media with use in MICOM. Community contributions are very much welcome and invited :smile:
 
 ## How to add a new recipe/medium
 
@@ -36,14 +36,19 @@ Run all steps in the notebook and save it. Then add a new entry in the `Availabl
 ---
 
 *Short description of the medium*
+
 [recipe](recipes/my_recipe.ipynb) | [medium](https://raw.githubusercontent.com/micom-dev/media/main/media/my_recipe.qza)
 
 Longer description of the growth medium.
 ```
 
+Finally create a pull request on this repository which will make your medium for addition into
+the repo.
+
 ## Available media
 
 **Western diet medium for the human gut (AGORA)**
+
 [recipe](recipes/agora.ipynb) | [medium](https://raw.githubusercontent.com/micom-dev/media/main/media/agora.qza)
 
 This is a growth medium representing the likely distribution of available nutrients in the lower intesting under
@@ -53,10 +58,11 @@ absorbed in the small intestine were diluted 1:10. The medium is adapted to the
 ---
 
 **Western diet medium for the human gut (AGORA)**
+
 [recipe](recipes/carveme.ipynb) | [medium](https://raw.githubusercontent.com/micom-dev/media/main/media/agora.qza)
 
 This is a growth medium representing the likely distribution of available nutrients in the lower intesting under
 an average European diet. The medium was taken from https://doi.org/10.1038/nbt.4212 and components commonly
 absorbed in the small intestine were diluted 1:10. Only components that could be mapped to the CARVEME DB were kept
 and the medium was completed to allow growth for all 1.8K+ genera in the database. The medium is adapted to the CARVEME
-reconstructions using Refseq v84.
+reconstructions using Refseq v84.