Release 2024.12.4

This hotfix release introduces a UI banner announcing an upcoming downtime event (scheduled for January 26-February 3).

Fixes #1521

Full Changelog: v1.2.3...v1.2.4

Release 2024.12.3

Fix #1496

Hotfix ingest and search for metaproteomic gene function annotations.

Release 2024.12.2

Fix #1497

Hotfix for study page display.

Release 2024.12.1

Hotfix for study page bugs:

• Improper use of length with a Set
• Improper handling of null values for a study's funding_sources

Fix #1493

Release 2024.12

What's Changed

• 767 add email field by @marySalvi in #1442
• Post message to Slack when ingest completes successfully by @eecavanna in #1466
• Implement API endpoint that returns TSV report about submissions that are pending review by @cristina-stonepedraza in #1443
• Add nmdc_edge as a permissible source_client value by @pkalita-lbl in #1471
• Enable gene function search on GO terms by @naglepuff in #1465
• Add ability to store Field Notes-related metadata on submissions by @pkalita-lbl in #1473
• Add additional data proxies by @naglepuff in #1472
• Model KEGG/GO mappings by @naglepuff in #1477
• Upgrade to nmdc-schema v11.2.1 by @pkalita-lbl in #1488
• Add delete submission button and overflow menu by @JamesTessmer in #1446
• Synchronize portal's navigation menu with upstream website's navigation menu by @eecavanna in #1490
• 1367 multiple env select by @marySalvi in #1372
• Allow users to submit without an email stored for their account by @marySalvi in #1487
• Allow creating a submission with string or list of strings for packageName by @pkalita-lbl in #1491
• Fix GO search bugs by @naglepuff in #1492
• Support Lipidome Results by @naglepuff in #1481

New Contributors

• @cristina-stonepedraza made their first contribution in #1443

Full Changelog: v1.1.0...v1.2.0

2024.11.1

Full Changelog: v1.1.0...v1.1.1

Hotfix to properly ingest metap gene function annotations.

Fixes #1479

Release 2024.11

What's Changed

• Update dependencies and enable sentry tracing by @naglepuff in #1420
• Update DOI award box for new use cases by @JamesTessmer in #1380
• Set profiles_sample_rate for sentry by @naglepuff in #1427
• Fix ingest post dependency upgrade by @naglepuff in #1428
• Hide banner about Berkeley Schema Roll Out downtime, and reset its content by @eecavanna in #1426
• Skip BRITE terms by @naglepuff in #1409
• Make submission portal login prompt be more prominent by @eecavanna in #1188
• Remove Berkeley update banner from data and submission portals by @naglepuff in #1421
• Add COG and PFAM facets to Data Portal by @naglepuff in #1436
• nginx payload size config and sample metadata loading indicator by @pkalita-lbl in #1445
• Use correct slot when querying gene aggregations by @naglepuff in #1433
• Bump nmdc-schema and nmdc-submission-schema to 11.1.0 by @eecavanna in #1448
• Change base url and order of string parsing by @marySalvi in #1455
• Remove has_calibration column from metab table by @naglepuff in #1454
• Properly ingest ko terms and COG pathways by @naglepuff in #1459
• Change base urls for kegg by @marySalvi in #1460
• Update base url for cog by @marySalvi in #1461

Full Changelog: v1.0.1...v1.1.0

Release 2024.10.1

Hotfix to remove site banner about Berkeley rollout downtime.

Fixes: #1424

Full Changelog: v1.0.0...v1.0.1

Release 2024.10

Summary

In this release, we switched from using the legacy schema to using the Berkeley schema.

What's Changed

• Merge main into berkeley-schema-migration by @eecavanna in #1349
• Replace Omics with Data Generation by @naglepuff in #1336
• Update to berkeley schema by @naglepuff in #1368
• Upgrade to nmdc-submission-schema v11.0.0rc1 by @pkalita-lbl in #1374
• Fix Berkeley schema element usage in frontend code by @pkalita-lbl in #1375
• Guard against request errors for PI images by @marySalvi in #1262
• Bump express from 4.19.2 to 4.21.0 in /web by @dependabot in #1396
• Bump dompurify from 2.4.7 to 2.5.7 in /web by @dependabot in #1398
• Update submission report to include "Source Client" and "Status" by @eecavanna in #1401
• Replace stale list of Redirect URIs with link to latest list by @eecavanna in #1402
• Initial implementation of metadata suggestion endpoint by @pkalita-lbl in #1403
• Rename omics_processing endpoints to data_generation by @naglepuff in #1404
• Use correct slot for study protocols for Berkeley schema by @naglepuff in #1407
• Berkeley Merge Cleanup by @naglepuff in #1408
• Update Data and Submission Portals to work with/use NMDC Schema version v11.0.1 (Berkeley schema) by @naglepuff in #1321
• Create index on download/data object association by @naglepuff in #1411
• Add banner announcing upcoming maintenance events (October 15-16) by @eecavanna in #1413
• Migrate workflow_type values in data_object table by @pkalita-lbl in #1416

Full Changelog: v0.25.0...v1.0.0

Release 2024.9.1

Hotfix to add site banner about Berkeley rollout downtime.

Full Changelog: v0.25.0...v0.25.1