Reading help | Review list | Ionic concentrations
Not always cardiac, not always cell, etc. Biased and incomplete.
- Model history: Noble, Rudy (2001) Models of cardiac ventricular action potentials; iterative interaction between experiment and simulation
- Cell to tissue level: Kleber, Rudy (2004) Basic Mechanisms of Cardiac Impulse Propagation and Associated Arrhythmias
- Channel to cell level: Rudy, Silva (2006) Computational Biology in the Study of Cardiac Ion Channels and Cell Electrophysiology
- Meta-analysis: Niederer, Fink, Noble, Smith (2009) A meta-analysis of cardiac electrophysiology computational models
- Cell focus: Winslow, Cortassa et al., Greenstein (2010) Integrative modeling of the cardiac ventricular myocyte
- Systems biology: Kohl, Crampin, Quinn, Noble (2010) Systems Biology: An Approach
- Overview and challenges: Fink, Niederer et al., Smith (2011) Cardiac cell modelling; Observations from the heart of the cardiac physiome project
- Model overview: Noble, Garny, Noble (2012) How the Hodgkin-Huxley equations inspired the Cardiac Physiome Project
- Atrial: Heijman, Erfanian Abdoust et al., Dobrev (2016) Computational models of atrial cellular electrophysiology and calcium handling, and their role in atrial fibrillation
- Clerx, Beattie, Gavaghan, Mirams (2019) Four ways to fit an ion channel model
- Whittaker, Clerx et al., Mirams (2020) Calibration of ionic and cellular cardiac electrophysiology models
- Marder, Goaillard (2006) Variability, compensation and homeostasis in neuron and network function
- Mirams, Pathmanathan et al., Clayton (2016) White paper; Uncertainty and variability in computational and mathematical models of cardiac physiology
- Ni, Morotti, Grandi (2018) A Heart for Diversity; Simulating Variability in Cardiac Arrhythmia Research
- Population of models: Muszkiewicz, Britton et al., Rodriguez (2016) Variability in cardiac electrophysiology; Using experimentally-calibrated populations of models to move beyond the single virtual physiological human paradigm
- Ball, Rice (1992) Stochastic models for ion channels; Introduction and bibliography
- Colquhoun (1998) Binding, gating, affinity and efficacy
- Also good on alternans: Krogh-Madsen, Christini (2006) Nonlinear Dynamics in Cardiology
- Chaos: Qu (2011) Chaos in the genesis and maintenance of cardiac arrythmias
- Qu, Hu, Garfinkel, Weiss (2014) Nonlinear and stochastic dynamics in the heart
- Great paper on diseases: Weiss, Garfinkel et al., Qu (2015) Perspective; A dynamics-based classification of ventricular arrhythmias
- Eisner, Bode, Venetucci, Trafford (2013) Calcium flux balance in the heart
- Winslow, Walker, Greenstein (2016) Modeling calcium regulation of contraction, energetics, signaling, and transcription in the cardiac myocyte
- Eisner, Caldwell, Kistamas, Trafford (2017) Calcium and Excitation-Contraction Coupling in the Heart
- Smith, Eisner (2019) Calcium Buffering in the Heart in Health and Disease
- Eisner, Caldwell, Trafford, Hutchings (2020) The Control of Diastolic Calcium in the Heart
- Pandit, Jalife (2013) Rotors and the Dynamics of Cardiac Fibrillation
- Nattel, Xiong, Aguilar (2017) Demystifying rotors and their place in clinical translation of atrial fibrillation mechanisms
- Franz (2003) The electrical restitution curve revisited; steep or flat slope, which is better
- Gaeta, Christini (2012) Non-linear dynamics of cardiac alternans; subcellular to tissue-level mechanisms of arrhythmia
Strength-duration curves, threshold, If, liminal length, conduction velocity, that type of thing
Billman (2011) Heart rate variability; A historical perspective
- Channels, pumps, exchangers: Gadsby (2009) Ion channels versus ion pumps; the principal difference, in principle
- Molecular dynamics of the pore: Roux, Allen, Berneche, Im (2004) Theoretical and computational models of biological ion channels
- Hess (1988) Elementary properties of cardiac calcium channel; a brief review
- Striessnig, Pinggera et al., Petronel (2014) L-type Ca channels in heart and brain
- Zamponi, Striessnig, Koschak, Dolphin (2015) The physiology, pathology, and pharmacology of voltage-gated calcium channels and their future therapeutic potential
- Chadda, Jeevaratnam, Lei, Huang (2017) Sodium channel biophysics, late sodium current and genetic arrhythmic syndromes
- A whole series by Catterall:
- Catterall (2014) Structure and function of voltage-gated sodium channels at atomic resolution
- Catterall (2012) Voltage-gated sodium channels at 60; structure, function and pathophysiology
- Catterall (2000) From ionic currents to molecular mechanisms; the structure and function of voltage-gated sodium channels
- Catterall (1995) Structure and Function of Voltage-Gated Ion Channels
- Amin, Asghari-Roodsari, Tan (2010) Cardiac sodium channelopathies
- Fozzard (2002) Cardiac sodium and calcium channels: a history of excitatory currents
- Grant (2001) Molecular Biology of Sodium Channels and Their Role in Cardiac Arrhythmias
- Gating currents: Patlak (1991) Molecular kinetics of voltage-dependent Na+ channels
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