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@ncbi-nlp

NLM/NCBI BioNLP Research Group (PI: Zhiyong Lu)

These tools are the results of research conducted in the Computational Biology Branch, NLM/NCBI. More information about NLM/NCBI's disclaimer policy is availabl

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  1. BioSentVec BioSentVec Public

    BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences

    Jupyter Notebook 581 100

  2. bluebert bluebert Public

    BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

    Python 564 80

  3. BLUE_Benchmark BLUE_Benchmark Public

    BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.

    Python 288 41

  4. NegBio NegBio Public

    📰 High-performance tool for negation and uncertainty detection in radiology reports

    Python 158 41

  5. BioWordVec BioWordVec Public

    Python 145 29

  6. TrialGPT TrialGPT Public

    Code and data for TrialGPT.

    Python 61 27

Repositories

Showing 10 of 35 repositories
  • BioREDirect Public
    ncbi-nlp/BioREDirect’s past year of commit activity
    Python 0 0 0 0 Updated Jan 23, 2025
  • MedCalc-Bench Public

    [NeurIPS 2024 Datasets and Benchmark Track Oral] MedCalc-Bench: Evaluating Large Language Models for Medical Calculations

    ncbi-nlp/MedCalc-Bench’s past year of commit activity
    Python 40 8 0 0 Updated Jan 12, 2025
  • TrialGPT Public

    Code and data for TrialGPT.

    ncbi-nlp/TrialGPT’s past year of commit activity
    Python 61 27 2 0 Updated Nov 24, 2024
  • ncbi-nlp/LLM-Medicine-Primer’s past year of commit activity
    3 1 0 0 Updated Oct 24, 2024
  • Calculator-Recommendation Public

    MedQA-Calc is a benchmarking dataset designed to assess the capability of LLMs to recommend clinical calculators

    ncbi-nlp/Calculator-Recommendation’s past year of commit activity
    Python 0 0 0 0 Updated Oct 22, 2024
  • ncbi-nlp/deepseenet-plus’s past year of commit activity
    Python 0 0 0 0 Updated Oct 14, 2024
  • ncbi-nlp/Clinical-Tool-Learning’s past year of commit activity
    Python 2 0 0 0 Updated Oct 9, 2024
  • EnzChemRED Public
    ncbi-nlp/EnzChemRED’s past year of commit activity
    0 0 0 0 Updated Sep 17, 2024
  • ncbi-nlp/Unmasking-GPT-Bias’s past year of commit activity
    Jupyter Notebook 3 0 0 0 Updated Sep 4, 2024
  • Deep-RPD-Net Public
    ncbi-nlp/Deep-RPD-Net’s past year of commit activity
    Python 0 0 0 0 Updated Aug 30, 2024

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