Stomach smooth muscle inner oblique layer cell

[JABelfiore]

defs, refs, uberon import - stomach smooth muscle inner oblique layer imported from uberon

[Caroline-99]

I suggest changing to EquivalentClass Def (smooth muscle cell and part_of some 'stomach smooth muscle inner oblique layer')

[Caroline-99]

In uberon, stomach smooth muscle inner oblique layer is an exact synonym to oblique muscle layer of stomach. I suggest adding an exact synonym stomach smooth muscle oblique layer cell

[Caroline-99]

The definition looks good and clear. However, I didn’t have full access to the reference PMID:33630273, and I couldn’t find information outlined in the definition in PMID:19691152.

I would suggest adding this reference PMID: 29493959.

[Caroline-99]

#gogoeditdiff

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -base file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2025-01-24/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-master.owl/cl-base.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2025-01-24/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-pr.owl/cl-base.owl

Ontology imports

Ontology annotations

UBERON_0008862 http://purl.obolibrary.org/obo/UBERON_0008862

Added

• Class: UBERON_0008862

stomach smooth muscle inner oblique layer cell http://purl.obolibrary.org/obo/CL_4047037

Added

• stomach smooth muscle inner oblique layer cell date "2024-12-09T10:53:19Z"^^dateTime

• stomach smooth muscle inner oblique layer cell contributor 0009-0005-7919-4905

• stomach smooth muscle inner oblique layer cell IAO_0000115 "A smooth muscle cell found in the innermost layer of the muscularis externa of the stomach wall. This cell forms a unique layer of smooth muscle fibers oriented obliquely to the stomach's longitudinal axis. It is responsible for aiding in the mixing and churning of gastric contents, contributing to mechanical digestion within the stomach."

  • hasDbXref "PMID:29493959"

  • hasDbXref "PMID:33630273"

• stomach smooth muscle inner oblique layer cell hasExactSynonym "stomach smooth muscle oblique layer cell"

• stomach smooth muscle inner oblique layer cell label "stomach smooth muscle inner oblique layer cell"@en

• Class: stomach smooth muscle inner oblique layer cell

• stomach smooth muscle inner oblique layer cell EquivalentTo smooth muscle cell and (BFO_0000050 some UBERON_0008862)

• stomach smooth muscle inner oblique layer cell SubClassOf smooth muscle cell

• stomach smooth muscle inner oblique layer cell SubClassOf BFO_0000050 some UBERON_0008862

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

stomach smooth muscle inner oblique layer http://purl.obolibrary.org/obo/UBERON_0008862

Added

• Class: stomach smooth muscle inner oblique layer

stomach smooth muscle inner oblique layer cell http://purl.obolibrary.org/obo/CL_4047037

Added

• stomach smooth muscle inner oblique layer cell date "2024-12-09T10:53:19Z"^^dateTime

• stomach smooth muscle inner oblique layer cell contributor 0009-0005-7919-4905

• stomach smooth muscle inner oblique layer cell definition "A smooth muscle cell found in the innermost layer of the muscularis externa of the stomach wall. This cell forms a unique layer of smooth muscle fibers oriented obliquely to the stomach's longitudinal axis. It is responsible for aiding in the mixing and churning of gastric contents, contributing to mechanical digestion within the stomach."

  • database_cross_reference "PMID:29493959"

  • database_cross_reference "PMID:33630273"

• stomach smooth muscle inner oblique layer cell has exact synonym "stomach smooth muscle oblique layer cell"

• stomach smooth muscle inner oblique layer cell label "stomach smooth muscle inner oblique layer cell"@en

• Class: stomach smooth muscle inner oblique layer cell

• stomach smooth muscle inner oblique layer cell EquivalentTo smooth muscle cell and (part of some stomach smooth muscle inner oblique layer)

[Caroline-99]

Thank you for the changes. I am not sure how relevant this reference is PMID:33630273 as I don't have access to the full article, and the abstract does not seem to be relevant to this cell type stomach smooth muscle inner oblique layer cell or the definition. I would suggest removing or replacing it with a more relevant reference.