Removed usage of logger module for config handling

There is still one place... a hack that is required to introduce the
new interface while not having the front-end refactored yet.

src/hermes/commands/deposit/file.py

@@ -7,7 +7,6 @@
 
 import json
 
-import hermes.logger as logger
 from hermes.commands.deposit.base import BaseDepositPlugin
 from hermes.model.path import ContextPath
 
@@ -17,7 +16,7 @@ def map_metadata(self) -> None:
         self.ctx.update(ContextPath.parse('deposit.file'), self.ctx['codemeta'])
 
     def publish(self) -> None:
-        file_config = logger.config.deposit.file
+        file_config = self.ctx.config.deposit.file
         output_data = self.ctx['deposit.file']
 
         with open(file_config.get('filename', 'hermes.json'), 'w') as deposition_file:

src/hermes/commands/deposit/invenio.py

@@ -43,7 +43,7 @@ def __init__(self, auth_token=None, platform_name=None) -> None:
         if platform_name is not None:
             self.platform_name = platform_name
 
-        self.config = getattr(logger.config.deposit, self.platform_name)
+        self.config = getattr(self.ctx.config.deposit, self.platform_name)
         self.headers.update({"User-Agent": hermes_user_agent})
 
         self.auth_token = auth_token
@@ -251,7 +251,7 @@ def __init__(self, click_ctx: click.Context, ctx: CodeMetaContext, client=None,
             self.client = client
 
         self.resolver = resolver or self.invenio_resolver_class(self.client)
-        self.config = getattr(logger.config.deposit, self.platform_name)
+        self.config = getattr(self.ctx.config.deposit, self.platform_name)
         self.links = {}
 
     # TODO: Populate some data structure here? Or move more of this into __init__?

src/hermes/commands/postprocess/invenio.py

@@ -11,8 +11,6 @@
 import toml
 from ruamel import yaml
 
-import hermes.logger as logger
-
 
 _log = logging.getLogger('deposit.invenio')
 
@@ -21,7 +19,7 @@ def config_record_id(ctx):
     deposition_path = ctx.get_cache('deposit', 'deposit')
     with deposition_path.open("r") as deposition_file:
         deposition = json.load(deposition_file)
-    conf = logger.config.hermes
+    conf = ctx.config.hermes
     try:
         conf.deposit.invenio.record_id = deposition['record_id']
         toml.dump(conf, open('hermes.toml', 'w'))

src/hermes/commands/postprocess/invenio_rdm.py

@@ -9,7 +9,6 @@
 import logging
 
 import toml
-import hermes.logger as logger
 
 
 _log = logging.getLogger('deposit.invenio_rdm')
@@ -19,7 +18,7 @@ def config_record_id(ctx):
     deposition_path = ctx.get_cache('deposit', 'deposit')
     with deposition_path.open("r") as deposition_file:
         deposition = json.load(deposition_file)
-    conf = logger.config.hermes
+    conf = ctx.config.hermes
     try:
         conf['deposit']['invenio_rdm']['record_id'] = deposition['record_id']
         toml.dump(conf, open('hermes.toml', 'w'))

src/hermes/commands/workflow.py

@@ -15,7 +15,6 @@
 
 import click
 
-import hermes.logger as logger
 from hermes.commands.deposit.base import BaseDepositPlugin
 from hermes.error import MisconfigurationError
 from hermes.model.context import HermesContext, HermesHarvestContext, CodeMetaContext
@@ -40,7 +39,7 @@ def harvest(click_ctx: click.Context):
     ctx.init_cache("harvest")
 
     # Get all harvesters
-    harvest_config = logger.config.harvest
+    harvest_config = ctx.config.harvest
     harvester_names = harvest_config.sources if type(harvest_config.sources) else [ep.name for ep in
                                                                                    metadata.entry_points(
                                                                                        group='hermes.harvest')]
@@ -85,7 +84,7 @@ def process(click_ctx: click.Context):
         click_ctx.exit(1)
 
     # Get all harvesters
-    harvest_config = logger.config.harvest
+    harvest_config = ctx.config.harvest
     harvester_names = harvest_config.sources if type(harvest_config.sources) else [ep.name for ep in
                                                                                    metadata.entry_points(
                                                                                        group='hermes.harvest')]
@@ -192,7 +191,7 @@ def deposit(click_ctx: click.Context, initial, auth_token, file):
     with open(codemeta_file) as codemeta_fh:
         ctx.update(codemeta_path, json.load(codemeta_fh))
 
-    deposit_config = logger.config.deposit
+    deposit_config = ctx.config.deposit
 
     plugin_group = "hermes.deposit"
     # TODO: Is having a default a good idea?
@@ -242,7 +241,7 @@ def postprocess(click_ctx: click.Context):
         click_ctx.exit(1)
 
     # Get all postprocessors
-    postprocess_config = logger.config.postprocess
+    postprocess_config = ctx.config.postprocess
     postprocess_names = postprocess_config.execute
 
     for postprocess_name in postprocess_names:

src/hermes/model/context.py

@@ -57,6 +57,10 @@ def __init__(self, project_dir: t.Optional[Path] = None):
         self._errors = []
         self.contexts = {self.hermes_lod_context}
 
+        # HACK this needs to be done differently
+        from hermes import logger
+        self.config = logger.config
+
     def __getitem__(self, key: ContextPath | str) -> t.Any:
         """
         Access a single entry from the context.