Strelka2 germline and somatic small variant caller
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Updated
Dec 29, 2021 - C++
Strelka2 germline and somatic small variant caller
Personal Cancer Genome Reporter (PCGR)
Microassembly based somatic variant caller for NGS data
SNV calling from single cell sequencing
A method for variant graph genotyping based on exact alignment of k-mers
ClairS - a deep-learning method for long-read somatic small variant calling
ClairS-TO - a deep-learning method for tumor-only somatic variant calling
Generic human DNA variant annotation pipeline
Detect and phase minor SNVs from long-read sequencing data
Filters for Next Generation Sequencing
A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expression using RNA-sequencing data.
A collection of software to work with genomic variants
Pipeline to call SNV's with 4 tools (VarDict, LoFreq, Mutect2 & SiNVICT)
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