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Add logic for running offline IODA tools. #600

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Add logic for running offline IODA tools. #600

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fb584ef
Add logic for running offline IODA tools.
delippi Jan 24, 2025
8d06d40
remove leading "python" to run *.py tool
delippi Jan 24, 2025
4b3003b
Merge branch 'rrfs-mpas-jedi' into feature/add_categoryVar2IODA
delippi Jan 24, 2025
a7b5660
Add "./" before executing python script
delippi Jan 24, 2025
ee5703e
Merge branch 'rrfs-mpas-jedi' into feature/add_categoryVar2IODA
delippi Jan 27, 2025
73404dd
Merge branch 'rrfs-mpas-jedi' into feature/add_categoryVar2IODA
MatthewPyle-NOAA Jan 28, 2025
5b2f060
Merge branch 'rrfs-mpas-jedi' into feature/add_categoryVar2IODA
MatthewPyle-NOAA Jan 30, 2025
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14 changes: 12 additions & 2 deletions scripts/exrrfs_ioda_bufr.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -34,9 +34,19 @@ for yaml in ${yaml_list[@]}; do
${MPI_RUN_CMD} ${execfile} ${yaml}
# some data may not be available at all cycles, so we don't check whether bufr2ioda.x runs successfully
done
ls ./ioda*nc

# run offline IODA tools
${cpreq} ${HOMErrfs}/sorc/RDASApp/rrfs-test/IODA/offline_add_var_to_ioda.py .
ioda_files=$(ls ioda*nc)
for ioda_file in ${ioda_files[@]}; do
./offline_add_var_to_ioda.py -o ${ioda_file}
base_name=$(basename "$ioda_file" .nc)
mv ${base_name}_llp.nc ${base_name}.nc
done

# file count sanity check and copy to COMOUT
ls ./ioda*nc
if (( $? == 0 )); then
# copy ioda*.nc to COMOUT
${cpreq} ${DATA}/ioda*.nc ${COMOUT}/ioda_bufr/
else
echo "WARNING: no ioda files generated."
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