Update main.nf

ebi-gene-expression-group · Nov 28, 2024 · 4a2af1f · 4a2af1f
1 parent 021411d
commit 4a2af1f
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/main.nf b/main.nf
@@ -154,7 +154,7 @@ process scanpy_multiplet_scrublet {
 
     script:
     """
-        if [ -z "${params.batch_variable}" ]; then
+        if [ -z "$batch_variable" ]; then
             scanpy-cli multiplet scrublet \
             --input-format 'anndata' \
             --output-format 'anndata' \