Tejaas - a tool for discovering trans-eQTLs

Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)

Computationally efficient and statistically powerful software for detecting context-specific eQTL effects in multi-context genomic studies.

atlasqtl R package - Fast global-local hotspot QTL detection

This readme repository contains sample codes for executing steps within our manuscript

Cell type-specific eQTL mapping

Book chapter on Bayesian eQTL mapping using Stan

Our comprehensive database integrates data from scRNA seq and sc-ATAC seq, identifying cis-regulatory elements (CREs) through comparison with ENCODE, Epimap, GWAS Catalog, and other datasets. By connecting transcription factors (TFs), CREs, and target genes, cEpiReg unveils hidden regulatory links crucial for understanding AD pathogenesis.

Analysis pipeline to examine how gene pleiotropy influences local adaptation in Silverleaf Sunflowers

Constructed a comprehensive database elucidating the intricate regulatory mechanisms underlying Alzheimer's Disease genetics, integrating scRNA-seq, scATAC-seq, CHIP-seq, CUT&RUN and eQTL data to identify cis-regulatory elements.

Single-cell eQTL mapping and causal gene regulatory network inference at high efficiency and accuracy